PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG407500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 297aa    MW: 32834 Da    PI: 7.3242
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG407500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.94.8e-1594145155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+++L+
  Pavir.9NG407500.1.p  94 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVRELE 145
                          79****************************...*******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-1492149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.16E-1292142No hitNo description
PROSITE profilePS5088816.41293144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-1893162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-1294145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-1199150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MALLDAVVYP HPQGHFGYGL SWSSDATSFG EWDPFLLASL VQNTEWGEEV GSKKASPEHY  60
AAPSAVEPPS PVTMTKRKRR RPMVVKNEEE IESQRMTHIA VERNRRRQMN EYLAVLRSLM  120
PPSYAQRGDQ ASIVGGAINY VRELEQLLQS LELQRKEHNP NLSNPFAGFF RFPQYSATSA  180
SHCHGGAGNR TNKEERPDRS PQSPSVAADI EASMVEGHAS VKVQAPRRPR QLLRLADGLQ  240
QLGLTTLLLN VSTAGTTVMY SFSLKVEDEC RLSSVEEIAA AVHEILGTVQ ERGGRL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17580KRKRRR
27680RKRRR
394105RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0588091e-66AK058809.1 Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983211.11e-163PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T47e-68BH096_ARATH; Transcription factor bHLH96
TrEMBLK4AIE11e-150K4AIE1_SETIT; Uncharacterized protein
STRINGSi038653m1e-149(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-49bHLH family protein